A B C D E F G H I J K L M N O P R S T U V W X Y Z _

A

actionPerformed(ActionEvent) - Method in class sdt.gui.ParameterDialog

actionPerformed(ActionEvent) - Method in class sdt.gui.ClientFrame

actionPerformed(ActionEvent) - Method in class sdt.gui.GaDialog

add(AveragePopProperties) - Method in interface sdt.ga.AveragePopProperties

is necessary to get the average properties of each generation

add(String, int) - Method in class sdt.gui.CostView

add(String, int) - Method in class sdt.gui.TimingPanel

add(String, int) - Method in class sdt.gui.GaView

add(String, int) - Method in class sdt.gui.ServerGraphPanel

add(String, int) - Method in interface sdt.model.OutputObserver

addComponent(Component, int, int, int, int, int, int) - Method in class sdt.gui.TimingPanel

addComponent(Component, int, int, int, int, int, int) - Method in class sdt.gui.MachinePanel

addComponent(Component, int, int, int, int, int, int) - Method in class sdt.gui.ServerGraphPanel

addComponent(Component, int, int, int, int, int, int) - Method in class sdt.gui.ClientPanel

addComponent(Component, int, int, int, int, int, int) - Method in class sdt.gui.SinglePopDisplay

addComponent(Container, Component, int, int, int, int, int, int) - Method in class sdt.gui.ParameterDialog

addComponent(Container, Component, int, int, int, int, int, int) - Method in class sdt.gui.GaDialog

addComponent(Container, Component, int, int, int, int, int, int, int) - Method in class sdt.gui.PopDisplay

addComponents() - Method in class sdt.gui.ServerFrame

addComponents() - Method in class sdt.gui.MemoryFrame

addComponents() - Method in class sdt.gui.LoadFrame

addJob(Task, Result, String, String) - Method in class sdt.dist.Program

This method adds a specified task to the "pool of tasks "

addJob(Task, Result, String, String) - Method in class sdt.net.Pool

add a job to the pool.

addLegend(int, String) - Method in class sdt.gui.PlotBox

addLegend(int, String) - Method in class sdt.gui.Plot

addPoint(int, double, double, boolean) - Method in class sdt.gui.Plot

addPointWithErrorBars(int, double, double, double, double, boolean) - Method in class sdt.gui.Plot

In the specified data set, add the specified x, y point to the plot with error bars.

addXTick(String, double) - Method in class sdt.gui.PlotBox

addYTick(String, double) - Method in class sdt.gui.PlotBox

append(String) - Method in class sdt.gui.CostView

append(String) - Method in class sdt.gui.TimingPanel

append(String) - Method in class sdt.gui.GaView

append(String) - Method in class sdt.gui.ServerGraphPanel

append(String) - Method in interface sdt.model.OutputObserver

applyMGAOps(Organism) - Method in class sdt.ga.Population

Implements the MGA operations.

Arc - class sdt.df.Arc.

Implementation of Arcs in a dataflow graph.

Arc() - Constructor for class sdt.df.Arc

Creates an instance of an Arc.

Arc(Object) - Constructor for class sdt.df.Arc

Create an instance of an Arc with specified data values.

AsyncGeneticAlgorithm - class sdt.ga.AsyncGeneticAlgorithm.

Base Asynchronous Genetic Algorithm class which provides a template for the different methods to be implemented.

AsyncGeneticAlgorithm() - Constructor for class sdt.ga.AsyncGeneticAlgorithm

Create an instance of an Asynchronous Genetic Algorithm.

AsyncGeneticAlgorithm(Class, Class) - Constructor for class sdt.ga.AsyncGeneticAlgorithm

Create an instance of an Asynchronous GA with a specified organism class and a specified fitness class.

AsyncPopulation - class sdt.ga.AsyncPopulation.

Implementation of the Population class used in the Asynchronous GA implementations.

AsyncPopulation(AsyncGeneticAlgorithm) - Constructor for class sdt.ga.AsyncPopulation

Create an instance of the population for an asynchronous GA, without instantiating the individuals in the population.

AsyncPrintThread - class sdt.ga.AsyncPrintThread.

Implementation of the thread which prints the properties of a generation as it completes.

AsyncPrintThread(AsyncPopulation) - Constructor for class sdt.ga.AsyncPrintThread

Creates an instance of a print thread with the specified population.

AveragePopProperties - interface sdt.ga.AveragePopProperties.

Any Fitness from which it is necessary to get the average properties of each generation has to implement this interface.

B

BarGraphData - class sdt.gui.BarGraphData.

BarGraphData(int, double) - Constructor for class sdt.gui.BarGraphData

beginLoadThread() - Method in class sdt.gui.LoadFrame

beginMemoryThread() - Method in class sdt.gui.MemoryFrame

block(Job) - Method in class sdt.dist.Program

This method is called to wait for the evaluation of a particular job to be completed.

C

clear(boolean) - Method in class sdt.gui.PlotBox

clear(boolean) - Method in class sdt.gui.Plot

Clear the plot of all data points.

Client - class Client.

Common Main or Client Program for the sequential/distributed Programs.

Client() - Constructor for class Client

create an instance of a client

Client(int, int, boolean, boolean, String, OutputObserver[]) - Constructor for class Client

create an instance of a client

ClientFrame - class sdt.gui.ClientFrame.

The ClientFrame class is a top-level window

ClientFrame() - Constructor for class sdt.gui.ClientFrame

Constructs a new ClientFrame with all the components and the menus.

ClientPanel - class sdt.gui.ClientPanel.

ClientPanel() - Constructor for class sdt.gui.ClientPanel

ClientPanel(ClientFrame) - Constructor for class sdt.gui.ClientPanel

clone() - Method in class sdt.ga.Fitness

Implementation of the clone method.

clone() - Method in class sdt.ga.Organism

Implementation of the clone method.

CmdLineArgException - class sdt.gui.CmdLineArgException.

CmdLineArgException() - Constructor for class sdt.gui.CmdLineArgException

CmdLineArgException(String) - Constructor for class sdt.gui.CmdLineArgException

Comparable - interface sdt.ga.Comparable.

any object which has to be compared has to implement this interface.

Compare - class sdt.ga.Compare.

Implements the compare operation where the current best solution is updated.

Compare(AsyncPopulation, Arc, Arc, Arc, Arc) - Constructor for class sdt.ga.Compare

Creates an instance of the Compare Node with the input and output arcs.

Compete - class sdt.ga.Compete.

Implements the tournament selection.

Compete(AsyncPopulation, Arc, Arc, Arc) - Constructor for class sdt.ga.Compete

Create an instance of a Compete node with the specified input and output arcs.

componentHidden(ComponentEvent) - Method in class sdt.gui.MemoryFrame

componentMoved(ComponentEvent) - Method in class sdt.gui.MemoryFrame

componentResized(ComponentEvent) - Method in class sdt.gui.MemoryFrame

componentShown(ComponentEvent) - Method in class sdt.gui.MemoryFrame

configureComponent(JComponent) - Method in class sdt.gui.WorkingAction

connected - Variable in class sdt.gui.PlotPoint

True if this point is connected to the previous point by a line.

Copy - class sdt.ga.Copy.

The copy nodes essentially removes a solution from the population in order for it participate in the genetic operations.

Copy(AsyncPopulation, Arc, Arc, Arc) - Constructor for class sdt.ga.Copy

Creates an instance of the Copy node with the specified input and output arcs.

copy(AveragePopProperties) - Method in interface sdt.ga.AveragePopProperties

is necessary to get the average properties of each generation

costView - Variable in class sdt.ga.GeneticAlgorithm

CostView - class sdt.gui.CostView.

CostView() - Constructor for class sdt.gui.CostView

createLogo() - Method in class sdt.gui.ClientFrame

createLogo() - Method in class sdt.gui.GaDialog

crossover_percentage - Variable in class sdt.ga.GeneticAlgorithm

crossover() - Method in class sdt.ga.Population

Implements the recombination by crossing over successive organisms.

crossover(Organism) - Method in class sdt.ga.Organism

Specify the implementation of a crossover.

CustomSerializable - interface sdt.net.CustomSerializable.

This class provides hook points for the users to implement their own customized read/write methods.

D

defaultFill() - Method in class sdt.gui.PopDisplay

defaultNames() - Method in class sdt.gui.ParameterDialog

disableComponents() - Method in class sdt.gui.ParameterDialog

disableComponents() - Method in class sdt.gui.GaDialog

disableDssStart() - Method in class sdt.gui.ClientFrame

disableLumpedField() - Method in class sdt.gui.ParameterDialog

disableRadioButtons() - Method in class sdt.gui.ParameterDialog

distributed - Static variable in class Client

Variable indicating whether the program should be run in distributed fashion or not.

distributed - Variable in class sdt.ga.GeneticAlgorithm

variable indicating if GA is run in a distributed fashion.

div(int) - Method in interface sdt.ga.AveragePopProperties

is necessary to get the average properties of each generation

drawPop() - Method in class sdt.ga.AsyncPopulation

A textual representation of the current population.

E

elitism_level - Variable in class sdt.ga.GeneticAlgorithm

enableComponents() - Method in class sdt.gui.ParameterDialog

enableComponents() - Method in class sdt.gui.GaDialog

enableDssStart() - Method in class sdt.gui.ClientFrame

enableLumpedField() - Method in class sdt.gui.ParameterDialog

enableRadioButtons() - Method in class sdt.gui.ParameterDialog

equals(Object) - Method in class sdt.gui.BarGraphData

equals(Object) - Method in class sdt.gui.KeyToDataset

equalTo(Comparable) - Method in interface sdt.ga.Comparable

Implements the '='

erasePoint(int, int) - Method in class sdt.gui.Plot

Erase the point at the given index in the given dataset.

errorBar - Variable in class sdt.gui.PlotPoint

True if the yLowEB and yHighEB fields are valid.

Evaluate - class sdt.ga.Evaluate.

Implicitly causes its input organism to be evaluated, and its fitness cached, by the call to getFitness().

evaluate() - Method in class sdt.ga.Organism

Specify how the fitness is evaluated.

Evaluate(AsyncPopulation, Arc, Arc) - Constructor for class sdt.ga.Evaluate

Create an instance of an evaluate node with the specified input and output arcs.

evaluate(Organism) - Method in class sdt.ga.GeneticAlgorithm

evaluate(Organism) - Method in class sdt.ga.AsyncGeneticAlgorithm

Specify how a certain organism is evaluated.

evaluation_count - Variable in class sdt.ga.GeneticAlgorithm

Evolve - class sdt.ga.Evolve.

Implements the dataflow network corresponding to the sequence in which the genetic algorithm operations happen.

Evolve(AsyncPopulation) - Constructor for class sdt.ga.Evolve

Create an instance of an Evolve class.

F

fillPlot() - Method in class sdt.gui.PlotBox

fillPlot() - Method in class sdt.gui.Plot

Rescale so that the data that is currently plotted just fits.

final_generation - Static variable in class sdt.ga.AsyncGeneticAlgorithm

Variable indicating the final generation , set by Population.addOrganism() when last generation is reached.

finalize() - Method in class Server

For garbage collection

finalize() - Method in class sdt.ga.Evaluate

for garbage collection.

finalize() - Method in class sdt.ga.Compete

for garbage collection.

finalize() - Method in class sdt.ga.Copy

for garbage collection

finalize() - Method in class sdt.ga.AsyncPopulation

for garbage collection.

finalize() - Method in class sdt.ga.Compare

for garbage collection.

finalize() - Method in class sdt.ga.Fitness

For garbage collection

finalize() - Method in class sdt.ga.Organism

For garbage collection

finalize() - Method in class sdt.net.Pool

For garbage collection

finalize() - Method in class sdt.net.PersistentObjectOutputStream

For garbage collection

finalize() - Method in class sdt.net.Job

For garbage collection

finalize() - Method in class sdt.net.PersistentObjectInputStream

For garbage collection

fitness - Variable in class sdt.ga.Organism

Fitness class associated with this organism.

Fitness - class sdt.ga.Fitness.

Different GA's need to return different types of values.

fitness_class - Variable in class sdt.ga.GeneticAlgorithm

class of organism fitness

Fitness() - Constructor for class sdt.ga.Fitness

Create an instance of the Fitness.

free() - Method in class sdt.ga.AsyncPopulation

G

ga - Variable in class sdt.ga.Organism

Genetic Algorithm class associated with this organism.

GaDialog - class sdt.gui.GaDialog.

GaDialog(JFrame, String) - Constructor for class sdt.gui.GaDialog

gaView - Variable in class sdt.ga.GeneticAlgorithm

GaView - class sdt.gui.GaView.

GaView() - Constructor for class sdt.gui.GaView

generationNo - Variable in class sdt.ga.GeneticAlgorithm

generations - Variable in class sdt.ga.GeneticAlgorithm

GeneticAlgorithm - class sdt.ga.GeneticAlgorithm.

This class implements the main module in a GA.

GeneticAlgorithm() - Constructor for class sdt.ga.GeneticAlgorithm

GeneticAlgorithm(Class) - Constructor for class sdt.ga.GeneticAlgorithm

default constructor for GA class

GeneticAlgorithm(Class, Class) - Constructor for class sdt.ga.GeneticAlgorithm

Creates an instance of a GeneticAlgorithm class with the specified organism and fitness classes.

getActiveEvolveCount() - Method in class sdt.ga.AsyncPopulation

Returns the number of active evolve nodes.

getAvgFitness() - Method in class sdt.ga.Population

getAvgFitness() - Method in class sdt.ga.AsyncPopulation

Returns the average fitness of a generation.

getAvgProperties() - Method in class sdt.ga.AsyncPopulation

Returns the average properties of the generation.

getClientPanel() - Method in class sdt.gui.ClientFrame

Gets the panel containing the display of the client

getClientServerPanel() - Method in class sdt.gui.ClientPanel

getCmdLineFilename() - Method in class sdt.gui.Plot

Return the last file name seen on the command-line arguments parsed by parseArgs().

getColorByName(String) - Static method in class sdt.gui.PlotBox

getCOP() - Method in class sdt.gui.GaDialog

getDataurl() - Method in class sdt.gui.PlotBox

getDocumentBase() - Method in class sdt.gui.PlotBox

getElitism() - Method in class sdt.gui.GaDialog

getFitness() - Method in class sdt.ga.Organism

Returns the fitness of the organism.

getFitnessValue() - Method in class sdt.ga.Fitness

Returns the fitness value.

getFittestOrganism() - Method in class sdt.ga.Population

Returns the fittest organism in the current population.

getGenerationNumber() - Method in class sdt.ga.AsyncPopulation

Returns the current generation number.

getGeneticAlgorithm() - Method in class sdt.ga.AsyncPopulation

Get the associated asynchronous GA.

getIncumbent() - Method in class sdt.ga.AsyncPopulation

Returns the incumbent (current best) solution.

getIncumbent() - Method in class sdt.ga.AsyncGeneticAlgorithm

return the Incumbent (best) organism.

getInitialOrganism() - Method in class sdt.ga.Organism

get the initial organism to serve as a template

getInput() - Method in class sdt.net.Job

returns the input task

getJob() - Method in class sdt.net.Pool

removes a task from the head of the waiting queue for evaluation.

getLegend(int) - Method in class sdt.gui.PlotBox

getMaxDataSets() - Method in class sdt.gui.Plot

Deprecated.

getMinimizeCheck() - Method in class sdt.gui.GaDialog

getMinimumSize() - Method in class sdt.gui.PlotBox

getMR() - Method in class sdt.gui.GaDialog

getNoOfGenerations() - Method in class sdt.gui.GaDialog

getOrganismAt(int) - Method in class sdt.ga.AsyncPopulation

Returns the candidate solution at a fixed position.

getOutput() - Method in class sdt.net.Job

returns the result of the evaluation.

getPhenotypeComp(Organism) - Method in class sdt.ga.Organism

??

getPoolPanel() - Method in class sdt.gui.ClientPanel

getPoolPlot() - Method in class sdt.gui.ServerGraphPanel

getPopulationSize() - Method in class sdt.gui.GaDialog

getPreferredSize() - Method in class sdt.gui.PlotBox

getPrintLevel() - Method in class sdt.gui.GaDialog

getRandomArc() - Method in class sdt.ga.AsyncPopulation

Returns a random solution from the current population.

getRandomOrganism() - Method in class sdt.ga.Population

getRandomPosition(int) - Method in class sdt.ga.Population

getResultName() - Method in class sdt.net.Job

returns the class name of the result object

getRunningSize() - Method in class sdt.net.Pool

returns the size of the running queue.

getSelectedIndex() - Method in class sdt.gui.ClientFrame

getServerGraphPanel() - Method in class sdt.gui.ClientFrame

Gets the panel containing the graphs of various servers.

getSFP() - Method in class sdt.gui.GaDialog

getSuccessor() - Method in class sdt.ga.AsyncPopulation

Returns the instance of the successor population.

getTaskName() - Method in class sdt.net.Job

returns the class name of the input task

getTaskPlot() - Method in class sdt.gui.ServerGraphPanel

getTextAreaPanel() - Method in class sdt.gui.ClientPanel

getTimingPanel() - Method in class sdt.gui.ClientFrame

getToken() - Method in class sdt.df.Arc

removes the token from the arc.

getWaitingSize() - Method in class sdt.net.Pool

returns the size of the waiting queue.

graphics - Variable in class sdt.ga.GeneticAlgorithm

greaterThan(Comparable) - Method in interface sdt.ga.Comparable

Implements the '>'

H

hasFitness() - Method in class sdt.ga.Organism

Returns if the fitness is evaluated.

hashCode() - Method in class sdt.gui.BarGraphData

hashCode() - Method in class sdt.gui.KeyToDataset

hasToken() - Method in class sdt.df.Arc

returns if the arc has the tokens

I

id - Variable in class sdt.ga.Organism

Organism id

incumbent - Static variable in class sdt.ga.AsyncGeneticAlgorithm

Variable to keep track of current best organism

inform() - Method in class sdt.ga.AsyncPrintThread

notifies the thread that fitness evaluations are complete.

init() - Method in class sdt.gui.PlotBox

initOrganism - Static variable in class sdt.ga.Organism

Instance of the organism created at startup.

initProgram() - Method in class Client

Depending on whether the program needs to be run distributed or not, appropriate program classes are instantiated.

initProgram(OutputObserver[]) - Method in class Client

Depending on whether the program needs to be run distributed or not, appropriate program classes are instantiated with the appropriate observers.

input - Variable in class sdt.df.Node

input arcs to the node.

isFitnessEvaluated() - Method in class sdt.ga.Fitness

returns if the fitness has been evaluated.

isOrganismAt(int) - Method in class sdt.ga.AsyncPopulation

???

isRunnable() - Method in class Client

Returns if the program to be run is well configured.

itemStateChanged(ItemEvent) - Method in class sdt.gui.ParameterDialog

itemStateChanged(ItemEvent) - Method in class sdt.gui.LoadFrame

itemStateChanged(ItemEvent) - Method in class sdt.gui.GaDialog

J

Job - class sdt.net.Job.

This class implements "job" objects which are placed in the "pool of tasks".

Job(Task, Result, String, String) - Constructor for class sdt.net.Job

A Job is instantiated by specifying the input task, expected result and their fully qualified class names.

K

KeyToDataset - class sdt.gui.KeyToDataset.

KeyToDataset(int, double) - Constructor for class sdt.gui.KeyToDataset

L

lessThan(Comparable) - Method in interface sdt.ga.Comparable

Implements the '<'

LoadFrame - class sdt.gui.LoadFrame.

LoadFrame(ClientFrame, String, boolean, boolean, boolean, boolean) - Constructor for class sdt.gui.LoadFrame

LoadFrame(String, boolean, boolean, boolean, boolean) - Constructor for class sdt.gui.LoadFrame

Lock - class sdt.ga.Lock.

Implements a lock object to be used.

Lock() - Constructor for class sdt.ga.Lock

M

MachinePanel - class sdt.gui.MachinePanel.

MachinePanel() - Constructor for class sdt.gui.MachinePanel

main(String[]) - Static method in class Server

main(String[]) - Static method in class Client

main(String[]) - Static method in class sdt.gui.ClientFrame

main(String[]) - Static method in class sdt.gui.ServerFrame

main(String[]) - Static method in class sdt.gui.PopDisplay

Mate - class sdt.ga.Mate.

Implements the genetic operations such as crossover and mutation required to mimic the process of natural evolution.

Mate(AsyncPopulation, Arc, Arc, Arc, Arc) - Constructor for class sdt.ga.Mate

Create an instance of a Mate node with the specified input and output arcs.

MemoryFrame - class sdt.gui.MemoryFrame.

MemoryFrame(ClientFrame, String, boolean, boolean, boolean, boolean) - Constructor for class sdt.gui.MemoryFrame

MemoryFrame(String, boolean, boolean, boolean, boolean) - Constructor for class sdt.gui.MemoryFrame

mga - Variable in class sdt.ga.GeneticAlgorithm

variable indicating if MGA solutions are required.

mga_solns - Variable in class sdt.ga.GeneticAlgorithm

minimize_evaluations - Variable in class sdt.ga.GeneticAlgorithm

mouseClicked(MouseEvent) - Method in class sdt.gui.PlotBox.ZoomListener

mouseDragged(MouseEvent) - Method in class sdt.gui.PlotBox.DragListener

mouseEntered(MouseEvent) - Method in class sdt.gui.PlotBox.ZoomListener

mouseExited(MouseEvent) - Method in class sdt.gui.PlotBox.ZoomListener

mouseMoved(MouseEvent) - Method in class sdt.gui.PlotBox.DragListener

mousePressed(MouseEvent) - Method in class sdt.gui.PlotBox.ZoomListener

mouseReleased(MouseEvent) - Method in class sdt.gui.PlotBox.ZoomListener

mutate() - Method in class sdt.ga.Population

Implements the mutation operator

mutate() - Method in class sdt.ga.Organism

Specify the implementation of mutation.

mutation_rate - Variable in class sdt.ga.GeneticAlgorithm

N

n_mga - Variable in class sdt.ga.GeneticAlgorithm

Number of MGA solutions needed.

newArray(int) - Static method in class sdt.df.Arc

Creates an array of Arcs of required length.

newInstance(GeneticAlgorithm) - Static method in class sdt.ga.Fitness

creates a newInstace of a sub class from the super class

newInstance(GeneticAlgorithm) - Static method in class sdt.ga.Organism

This is the preferred way to instantiate an organism, since it appropriately sets the ga field.

niching_percentage - Variable in class sdt.ga.GeneticAlgorithm

Node - class sdt.df.Node.

Abstract implementation of a Node in a dataflow graph.

Node() - Constructor for class sdt.df.Node

O

old - Variable in class sdt.ga.Population

Organism - class sdt.ga.Organism.

This is the base class which represents an individual in a GA.

organism_class - Variable in class sdt.ga.GeneticAlgorithm

Organism() - Constructor for class sdt.ga.Organism

output - Variable in class sdt.df.Node

output arcs to the node.

OutputObserver - interface sdt.model.OutputObserver.

P

p - Static variable in class sdt.gui.PopDisplay

paint(Graphics) - Method in class sdt.gui.PlotBox

paint(Graphics) - Method in class sdt.gui.Plot

Start a new thread to paint the component contents.

ParameterDialog - class sdt.gui.ParameterDialog.

ParameterDialog(JFrame, String) - Constructor for class sdt.gui.ParameterDialog

parseArgs(String[]) - Method in class sdt.gui.Plot

Parse pxgraph style command line arguments.

parseFile(String) - Method in class sdt.gui.PlotBox

parseFile(String, URL) - Method in class sdt.gui.PlotBox

parseFile(String, URL) - Method in class sdt.gui.Plot

Deprecated.

parsePxgraphargs(String) - Method in class sdt.gui.Plot

Split a string containing pxgraph-compatible command-line arguments into an array and call parseArgs() on the array.

PersistentObjectInputStream - class sdt.net.PersistentObjectInputStream.

This is used to read the transient fields too while reading the GA from a file using Serialization.

PersistentObjectInputStream(InputStream) - Constructor for class sdt.net.PersistentObjectInputStream

PersistentObjectOutputStream - class sdt.net.PersistentObjectOutputStream.

This is used to save the transient fields too while saving the GA from a file using Serialization.

PersistentObjectOutputStream(OutputStream) - Constructor for class sdt.net.PersistentObjectOutputStream

Plot - class sdt.gui.Plot.

Plot() - Constructor for class sdt.gui.Plot

plot(int, int, double) - Method in class sdt.gui.CostView

plot(int, int, double) - Method in class sdt.gui.TimingPanel

plot(int, int, double) - Method in class sdt.gui.GaView

plot(int, int, double) - Method in class sdt.gui.ServerGraphPanel

Does nothing, just to maintain the compatibility with the interface OutputObserver

plot(int, int, double) - Method in interface sdt.model.OutputObserver

PlotBox - class sdt.gui.PlotBox.

I guess the zooming can be disabled by just turning it off right here

PlotBox.DragListener - class sdt.gui.PlotBox.DragListener.

PlotBox.DragListener(PlotBox) - Constructor for class sdt.gui.PlotBox.DragListener

PlotBox.ZoomListener - class sdt.gui.PlotBox.ZoomListener.

PlotBox.ZoomListener(PlotBox) - Constructor for class sdt.gui.PlotBox.ZoomListener

PlotBox() - Constructor for class sdt.gui.PlotBox

PlotPoint - class sdt.gui.PlotPoint.

PlotPoint() - Constructor for class sdt.gui.PlotPoint

pool - Static variable in class Client

The pool of tasks associated with the client for distributed programs.

Pool - class sdt.net.Pool.

Pool(int) - Constructor for class sdt.net.Pool

instantiates a pool with by listening on the specified port for incoming connections.

Pool(int, OutputObserver[]) - Constructor for class sdt.net.Pool

instantiates a pool with by listening on the specified port for incoming connections.

PopDisplay - class sdt.gui.PopDisplay.

PopDisplay(int, int) - Constructor for class sdt.gui.PopDisplay

popFinished - Variable in class sdt.ga.AsyncPrintThread

boolean indicating if the fitness evaluations in a generation has completed.

populateWith(Population) - Method in class sdt.ga.Population

Implements the tournament selection of organisms in the present population from the old population.

populateWith(Population, Organism, Organism[]) - Method in class sdt.ga.Population

Tournament Selection operation when MGA solutions are required.

Population - class sdt.ga.Population.

Provides a representation of a population in a particular genertion.

population_size - Variable in class sdt.ga.GeneticAlgorithm

Population(GeneticAlgorithm, boolean) - Constructor for class sdt.ga.Population

Creates an instance of population with organisms instatiated depending on the specification

print - Static variable in class sdt.ga.Lock

print_level - Variable in class sdt.ga.GeneticAlgorithm

printPop(AsyncPopulation) - Method in class sdt.ga.AsyncPrintThread

Prints the properties of the population.

printTimes(int, String) - Static method in class sdt.ga.Util

Prints the string a certain number of times.

Program - class sdt.dist.Program.

Abstract representation of a distributed program.

Program() - Method in class Client

returns the current program class.

Program() - Constructor for class sdt.dist.Program

putOrganism(Organism) - Method in class sdt.ga.AsyncPopulation

Places an organism in the current population in the next available position.

putOutput(Result, String) - Method in class sdt.net.Job

This method sets the result of the evaluation and notifies the methods which are blocking for the evaluation to complete.

putRandomOrganisms() - Method in class sdt.ga.AsyncPopulation

Create random solutions and fill up the population.

putToken(Object) - Method in class sdt.df.Arc

places a certain data value in the arc.

R

random - Static variable in class sdt.ga.GeneticAlgorithm

randomize() - Method in class sdt.ga.Population

Randomizes the population by randomizing each constituting organism.

randomize() - Method in class sdt.ga.Organism

Specify the randomize method.

read(InputStream) - Method in class sdt.gui.PlotBox

read(InputStream) - Method in class sdt.gui.Plot

Override the base class to register that we are reading a new data set.

readPxgraph(InputStream) - Method in class sdt.gui.Plot

Read a pxgraph-compatible binary encoded file.

readSerializable(ObjectInputStream) - Method in class sdt.ga.Organism

Specify the communication protocol to create the organism from the output stream.

readSerializable(ObjectInputStream) - Method in interface sdt.net.CustomSerializable

Specifies how to read the object to the input stream.

ready() - Method in class sdt.net.Job

returns if the task evaluation is complete or not.

redraw(int, int) - Method in class sdt.gui.PopDisplay

remove(String) - Method in class sdt.gui.CostView

remove(String) - Method in class sdt.gui.TimingPanel

remove(String) - Method in class sdt.gui.GaView

remove(String) - Method in class sdt.gui.ServerGraphPanel

remove(String) - Method in interface sdt.model.OutputObserver

Result - interface sdt.net.Result.

The result is stored in a class which extends this class.

returnToPool(Job) - Method in class sdt.net.Pool

returns a job to the pool if a connection fails.

run() - Method in class Client

Starts the current program.

run() - Method in class sdt.ga.Evaluate

Implements the evaluate operation.

run() - Method in class sdt.ga.Compete

Implements the tournament selection.

run() - Method in class sdt.ga.Copy

Implements the copy operation.

run() - Method in class sdt.ga.Evolve

Implements the "Natural Evolution Process".

run() - Method in class sdt.ga.AsyncPrintThread

The print thread blocks when fitness evaluations are not complete, and prints the population properties when the evaluations are finished.

run() - Method in class sdt.ga.AsyncPopulation

The population creates the dataflow nodes and arcs and fires them up.

run() - Method in class sdt.ga.Compare

Implements the compare operation.

run() - Method in class sdt.ga.Mate

implements the crossover and mutation operators.

run(boolean) - Method in class sdt.dist.Program

This method implements the actual steps of the program.

run(boolean) - Method in class sdt.ga.GeneticAlgorithm

Implements the run method with various steps involved in a genetic algorithm.

run(boolean) - Method in class sdt.ga.AsyncGeneticAlgorithm

This method provides the sequence of various steps involved in a GA.

runTask() - Method in interface sdt.net.Task

Specify how the input task is to be executed.

S

save_mode - Variable in class sdt.ga.GeneticAlgorithm

sdt.df - package sdt.df

sdt.dist - package sdt.dist

sdt.ga - package sdt.ga

sdt.gui - package sdt.gui

sdt.model - package sdt.model

sdt.net - package sdt.net

seed - Static variable in class sdt.ga.GeneticAlgorithm

seeded - Variable in class sdt.ga.GeneticAlgorithm

seeFittestOrganism() - Method in class sdt.ga.AsyncPopulation

examines the fittest organism.

seeOrganismAt(int) - Method in class sdt.ga.AsyncPopulation

Examine the token associated with a certain candidate solution.

seeToken() - Method in class sdt.df.Arc

examines the token without removing it from the arc.

select_fittest_percentage - Variable in class sdt.ga.GeneticAlgorithm

Server - class Server.

This is the Server program which receives a Task, evaluates it and returns the Result.

ServerFrame - class sdt.gui.ServerFrame.

ServerFrame() - Constructor for class sdt.gui.ServerFrame

ServerGraphPanel - class sdt.gui.ServerGraphPanel.

ServerGraphPanel() - Constructor for class sdt.gui.ServerGraphPanel

ServerGraphPanel(ClientFrame) - Constructor for class sdt.gui.ServerGraphPanel

setBackground(Color) - Method in class sdt.gui.PlotBox

setBarGraph(boolean) - Method in class sdt.gui.Plot

setBars(boolean) - Method in class sdt.gui.Plot

Turn bars on or off (for bar charts).

setBars(double, double) - Method in class sdt.gui.Plot

Turn bars on and set the width and offset.

setBinary(boolean) - Method in class sdt.gui.PlotBox

setBounds(int, int, int, int) - Method in class sdt.gui.PlotBox

setButtons(boolean) - Method in class sdt.gui.PlotBox

setConnected(boolean) - Method in class sdt.gui.Plot

If the argument is true, then the default is to connect subsequent points with a line.

setDataurl(String) - Method in class sdt.gui.PlotBox

setDefaultValues() - Method in class sdt.gui.ParameterDialog

setDefaultValues() - Method in class sdt.gui.GaDialog

setDocumentBase(URL) - Method in class sdt.gui.PlotBox

setEvaluatedOrg(int, int) - Method in class sdt.gui.PopDisplay

setFitness(Fitness) - Method in class sdt.ga.Organism

This methods assigns the calculated fitness to the organism.

setFitnessEvaluated(boolean) - Method in class sdt.ga.Fitness

sets the variable indicating the status of the fitness evaluation.

setForeground(Color) - Method in class sdt.gui.PlotBox

setGA(AsyncGeneticAlgorithm) - Method in class sdt.ga.AsyncPopulation

sets the asynchronous GA.

setGA(GeneticAlgorithm) - Method in class sdt.ga.Population

setGA(GeneticAlgorithm) - Method in class sdt.ga.Organism

set the ga variable of this class

setGranularity(int) - Method in class sdt.net.Pool

??

setGrid(boolean) - Method in class sdt.gui.PlotBox

setImpulses(boolean) - Method in class sdt.gui.Plot

If the argument is true, then a line will be drawn from any plotted point down to the x axis.

setImpulses(boolean, int) - Method in class sdt.gui.Plot

If the first argument is true, then a line will be drawn from any plotted point in the specified dataset down to the x axis.

setIncumbent(Organism) - Method in class sdt.ga.AsyncPopulation

Sets the current best solution.

setIncumbent(Organism) - Method in class sdt.ga.AsyncGeneticAlgorithm

sets the Incumbent (best) organism.

setInput(Arc) - Method in class sdt.df.Node

sets the input arcs.

setInput(Arc, Arc) - Method in class sdt.df.Node

sets the input arcs.

setLabelFont(String) - Method in class sdt.gui.PlotBox

setMarksStyle(String) - Method in class sdt.gui.Plot

Set the marks style to "none", "points", "dots", or "various".

setMarksStyle(String, int) - Method in class sdt.gui.Plot

Set the marks style to "none", "points", "dots", or "various" for the specified dataset.

setNonEvaluatedOrg(int, int) - Method in class sdt.gui.PopDisplay

setNoOrg(int, int) - Method in class sdt.gui.PopDisplay

setNumSets(int) - Method in class sdt.gui.Plot

Deprecated.

setOutput(Arc) - Method in class sdt.df.Node

sets the output arcs.

setOutput(Arc, Arc) - Method in class sdt.df.Node

sets the output arcs.

setOutput(Result) - Method in class sdt.net.Job

sets the result of the evaluation

setPointsPersistence(int) - Method in class sdt.gui.Plot

Calling this method with a positive argument sets the persistence of the plot to the given number of points.

setPopulation(AsyncPopulation) - Method in class sdt.ga.Evaluate

sets the current population.

setPopulation(AsyncPopulation) - Method in class sdt.ga.Compete

sets the current population.

setPopulation(AsyncPopulation) - Method in class sdt.ga.Copy

sets the current population.

setPopulation(AsyncPopulation) - Method in class sdt.ga.Compare

sets the current population.

setPopulation(AsyncPopulation) - Method in class sdt.ga.Mate

sets the current population.

setPrintToken(boolean) - Method in class sdt.ga.AsyncPopulation

sets the print token

setProgram(String) - Method in class Client

initializes the program classes.

setResult(Result) - Method in interface sdt.net.Task

????

setSize(int, int) - Method in class sdt.gui.PlotBox

setStatus(boolean) - Method in class sdt.gui.Plot

setSweepsPersistence(int) - Method in class sdt.gui.Plot

A sweep is a sequence of points where the value of X is increasing.

setTitle(String) - Method in class sdt.gui.PlotBox

setTitleFont(String) - Method in class sdt.gui.PlotBox

setUp() - Method in class sdt.gui.CostView

setUp() - Method in class sdt.gui.GaView

setUp() - Method in class sdt.gui.SinglePopDisplay

setUp() - Method in class sdt.gui.PopDisplay

setUpComponents() - Method in class sdt.gui.ParameterDialog

setUpComponents() - Method in class sdt.gui.ClientFrame

Sets up the components.

setUpComponents() - Method in class sdt.gui.TimingPanel

setUpComponents() - Method in class sdt.gui.MachinePanel

setUpComponents() - Method in class sdt.gui.GaDialog

setUpComponents() - Method in class sdt.gui.ServerGraphPanel

public void updatePool(int seq,double x, int y, String name){ if(poolLegendChk[seq]){ poolPlot.addLegend(seq,name); poolLegendChk[seq] = false; poolPlot.repaint(); } if(x>initPoolXRange){ initPoolXRange = initPoolXRange+10; poolPlot.setXRange(0,initPoolXRange); poolPlot.repaint(); } if(y> initPoolYRange){ initPoolYRange = initPoolYRange+10; poolPlot.setYRange(0,initPoolYRange); poolPlot.repaint(); } poolPlot.addPoint(seq,x,y,false); }

setUpComponents() - Method in class sdt.gui.ClientPanel

setUpMenu() - Method in class sdt.gui.ClientFrame

Sets up the menu

setUpMenu() - Method in class sdt.gui.ServerFrame

setUpPlot() - Method in class sdt.gui.CostView

setUpPlot() - Method in class sdt.gui.TimingPanel

setUpPlot() - Method in class sdt.gui.GaView

setUpPlot() - Method in class sdt.gui.MemoryFrame

setUpPlot() - Method in class sdt.gui.LoadFrame

setUpPoolPlot() - Method in class sdt.gui.ServerGraphPanel

setUpTaskPlot() - Method in class sdt.gui.ServerGraphPanel

setXLabel(String) - Method in class sdt.gui.PlotBox

setXLog(boolean) - Method in class sdt.gui.PlotBox

setXRange(double, double) - Method in class sdt.gui.PlotBox

setYLabel(String) - Method in class sdt.gui.PlotBox

setYLog(boolean) - Method in class sdt.gui.PlotBox

setYRange(double, double) - Method in class sdt.gui.PlotBox

sharing_percentage - Variable in class sdt.ga.GeneticAlgorithm

SinglePopDisplay - class sdt.gui.SinglePopDisplay.

start() - Method in class sdt.net.Pool

starts the manager thread.

storage - Variable in class sdt.ga.Population

T

Task - interface sdt.net.Task.

A class must implement Task interface to enable remote evaluation via Server and Client.

textObs - Variable in class sdt.ga.GeneticAlgorithm

These is the observer which pipes the print statements to the GUI text screen.

TimingPanel - class sdt.gui.TimingPanel.

TimingPanel(ClientFrame) - Constructor for class sdt.gui.TimingPanel

toString() - Method in class sdt.ga.Population

toString() - Method in class sdt.ga.AsyncPopulation

Returns a string representation of the current population.

toString() - Method in class sdt.ga.Fitness

Returns a string representation of the fitness class.

toString() - Method in class sdt.net.Job

Returns a string representation of the job

toString() - Method in class sdt.gui.ClientFrame

Returns the String representation of the ClientFrame

toString() - Method in class sdt.gui.ClientPanel

U

update(Graphics) - Method in class sdt.gui.Plot

Override the base class to not clear the component first.

update(int, double, int, String) - Method in class sdt.gui.CostView

update(int, double, int, String) - Method in class sdt.gui.TimingPanel

update(int, double, int, String) - Method in class sdt.gui.GaView

update(int, double, int, String) - Method in class sdt.gui.ServerGraphPanel

update(int, double, int, String) - Method in interface sdt.model.OutputObserver

updateEvalCount() - Method in class sdt.ga.AsyncPopulation

Updates the evaluation count.

updateEvolveCount() - Method in class sdt.ga.AsyncPopulation

Updates the number of evolve nodes remaining in the dataflow graph.

updateJobStatus(Job) - Method in class sdt.net.Pool

Once a job is selected for evaluation, the job is removed from the waiting queue and placed on the running queue.

updateMGA(Organism[], Organism) - Method in class sdt.ga.Population

updates the MGA solution set if better solutions are found.

updateSuccessor(AsyncPopulation) - Method in class sdt.ga.AsyncPopulation

The pointers to the successor population are updated.

updateSuccessor(AsyncPopulation) - Method in class sdt.ga.AsyncGeneticAlgorithm

Once the evolve nodes in a certain generations complete, the pointers to the successor population are updated.

Util - class sdt.ga.Util.

A printing utility.

Util() - Constructor for class sdt.ga.Util

V

valueChanged(ListSelectionEvent) - Method in class sdt.gui.ParameterDialog

W

WorkingAction - class sdt.gui.WorkingAction.

WorkingAction(String, String, Icon) - Constructor for class sdt.gui.WorkingAction

write(OutputStream) - Method in class sdt.gui.PlotBox

writeSerializable(ObjectOutputStream) - Method in class sdt.ga.Organism

Specify the communication protocol to write the organism to the output stream.

writeSerializable(ObjectOutputStream) - Method in interface sdt.net.CustomSerializable

Specifies how to write the object to the output stream.

X

x - Variable in class sdt.gui.PlotPoint

Y

y - Variable in class sdt.gui.PlotPoint

yHighEB - Variable in class sdt.gui.PlotPoint

Error bar Y low value.

yLowEB - Variable in class sdt.gui.PlotPoint

Error bar Y low value.

Z

zoom(double, double, double, double) - Method in class sdt.gui.PlotBox

_

_background - Variable in class sdt.gui.PlotBox

_bottomPadding - Variable in class sdt.gui.PlotBox

_checkDatasetIndex(int) - Method in class sdt.gui.Plot

Check the argument to ensure that it is a valid data set index.

_checkDatasetIndexb(int, int) - Method in class sdt.gui.Plot

_colors - Static variable in class sdt.gui.PlotBox

_currentdataset - Variable in class sdt.gui.Plot

_documentBase - Variable in class sdt.gui.PlotBox

_drawBar(Graphics, int, long, long, boolean) - Method in class sdt.gui.Plot

Draw bar from the specified point to the y axis.

_drawBar1(Graphics, int, long, long, long, long, boolean) - Method in class sdt.gui.Plot

_drawErrorBar(Graphics, int, long, long, long, boolean) - Method in class sdt.gui.Plot

Draw an error bar for the specified yLowEB and yHighEB values.

_drawImpulse(Graphics, long, long, boolean) - Method in class sdt.gui.Plot

Draw a line from the specified point to the y axis.

_drawLine(Graphics, int, long, long, long, long, boolean) - Method in class sdt.gui.Plot

Draw a line from the specified starting point to the specified ending point.

_drawLine1(Graphics, int, long, long, long, long, boolean) - Method in class sdt.gui.Plot

_drawPlot(Graphics, boolean) - Method in class sdt.gui.PlotBox

_drawPlot(Graphics, boolean) - Method in class sdt.gui.Plot

Draw the axes and then plot all points.

_drawPlot1(Graphics, boolean) - Method in class sdt.gui.Plot

_drawPoint(Graphics, int, long, long, boolean) - Method in class sdt.gui.PlotBox

Put a mark corresponding to the specified dataset at the specified x and y position.

_drawPoint(Graphics, int, long, long, boolean) - Method in class sdt.gui.Plot

Put a mark corresponding to the specified dataset at the specified x and y position.

_foreground - Variable in class sdt.gui.PlotBox

_grid - Variable in class sdt.gui.PlotBox

_height - Variable in class sdt.gui.PlotBox

_leftPadding - Variable in class sdt.gui.PlotBox

_LOG10SCALE - Static variable in class sdt.gui.PlotBox

_lrx - Variable in class sdt.gui.PlotBox

_lry - Variable in class sdt.gui.PlotBox

_marks - Variable in class sdt.gui.Plot

_PADDING - Static variable in class sdt.gui.PlotBox

_painted - Variable in class sdt.gui.Plot

_parseLine(String) - Method in class sdt.gui.PlotBox

Parse a line that gives plotting information.

_parseLine(String) - Method in class sdt.gui.Plot

Parse a line that gives plotting information.

_points - Variable in class sdt.gui.Plot

_pointsb - Variable in class sdt.gui.Plot

_rightPadding - Variable in class sdt.gui.PlotBox

_setButtonsVisibility(boolean) - Method in class sdt.gui.PlotBox

Deprecated.

_topPadding - Variable in class sdt.gui.PlotBox

_ulx - Variable in class sdt.gui.PlotBox

_uly - Variable in class sdt.gui.PlotBox

_usecolor - Variable in class sdt.gui.PlotBox

_width - Variable in class sdt.gui.PlotBox

_write(PrintWriter) - Method in class sdt.gui.PlotBox

Write plot information to the specified output stream.

_write(PrintWriter) - Method in class sdt.gui.Plot

Write plot information to the specified output stream.

_xBottom - Variable in class sdt.gui.PlotBox

_xlog - Variable in class sdt.gui.PlotBox

_xMax - Variable in class sdt.gui.PlotBox

_xMin - Variable in class sdt.gui.PlotBox

_xRangeGiven - Variable in class sdt.gui.PlotBox

_xscale - Variable in class sdt.gui.PlotBox

_xTop - Variable in class sdt.gui.PlotBox

_yBottom - Variable in class sdt.gui.PlotBox

_ylog - Variable in class sdt.gui.PlotBox

_yMax - Variable in class sdt.gui.PlotBox

_yMin - Variable in class sdt.gui.PlotBox

_yRangeGiven - Variable in class sdt.gui.PlotBox

_yscale - Variable in class sdt.gui.PlotBox

_yTop - Variable in class sdt.gui.PlotBox

_zoom(int, int) - Method in class sdt.gui.PlotBox

_zoomBox(int, int) - Method in class sdt.gui.PlotBox

_zoomStart(int, int) - Method in class sdt.gui.PlotBox

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